Linux
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Linux is a family of open source Unix-like operating systems based on the Linux kernel, an operating system kernel first released on September 17, 1991 by Linus Torvalds. Linux is typically packaged in a Linux distribution (or distro for short).
Distributions include the Linux kernel and supporting system software and libraries, many of which are provided by the GNU Project. Many Linux distributions use the word "Linux" in their name, but the Free Software Foundation uses the name GNU/Linux to emphasize the importance of GNU software, causing some controversy.
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What a weird question, also that was never the case in the first place. You can still accomplish this with a simple bash script too.
Is it possible to bring back that experience? A unified, reliable CLI solution to make sure EVERYTHING is up to date?
Yes. Use a Linux distro that doesn't use flatpacks and you're good to go.
Make an alias like "sudo dnf upgrade && flatpak update".